IL_11FV_071

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_071 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.0946

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

11FV|1|I|G|188
11FV|1|I|G|189
11FV|1|I|A|190
11FV|1|I|A|191
11FV|1|I|C|192
11FV|1|I|U|193
11FV|1|I|G|194
*
11FV|1|I|C|201
11FV|1|I|U|202
11FV|1|I|A|203
11FV|1|I|A|204
11FV|1|I|G|205
11FV|1|I|U|206
11FV|1|I|A|207
11FV|1|I|C|208

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL15

Chain f

50S ribosomal protein L28