IL_11FV_080

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

11FV|1|I|G|801, 11FV|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_080 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1352

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

11FV|1|I|G|674
11FV|1|I|A|675
11FV|1|I|A|676
11FV|1|I|A|677
11FV|1|I|C|678
*
11FV|1|I|G|799
11FV|1|I|A|800
11FV|1|I|G|801
11FV|1|I|A|802
11FV|1|I|U|803
11FV|1|I|A|804
11FV|1|I|G|805
11FV|1|I|C|806

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL4

Chain T

Large ribosomal subunit protein uL15