IL_11FV_097

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

11FV|1|I|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_097 not in the Motif Atlas

Homologous match to IL_7A0S_033

Geometric discrepancy: 0.0898

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

11FV|1|I|C|998
11FV|1|I|U|999
11FV|1|I|A|1000
11FV|1|I|A|1001
11FV|1|I|G|1002
*
11FV|1|I|C|1153
11FV|1|I|G|1154
11FV|1|I|A|1155
11FV|1|I|A|1156
11FV|1|I|G|1157

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain Y

50S ribosomal protein L20

Chain Z

Large ribosomal subunit protein bL21

Chain h

50S ribosomal protein L30