IL_11FV_100

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

11FV|1|I|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_100 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.2989

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

11FV|1|I|U|1018
11FV|1|I|U|1019
11FV|1|I|A|1020
11FV|1|I|A|1021
11FV|1|I|G|1022
11FV|1|I|U|1023
11FV|1|I|G|1024
*
11FV|1|I|C|1140
11FV|1|I|U|1141
11FV|1|I|A|1142
11FV|1|I|A|1143
11FV|1|I|A|1144

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL13

Chain m

Large ribosomal subunit protein bL36A