IL_11FV_104

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_104 not in the Motif Atlas

Geometric match to IL_6IA2_004

Geometric discrepancy: 0.1289

The information below is about IL_6IA2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

11FV|1|I|G|1042
11FV|1|I|C|1043
11FV|1|I|C|1044
*
11FV|1|I|G|1112
11FV|1|I|U|1113
11FV|1|I|C|1114

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain d

Large ribosomal subunit protein bL25