IL_11FV_110

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_110 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.1468

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

11FV|1|I|A|1262
11FV|1|I|U|1263
11FV|1|I|A|1264
11FV|1|I|A|1265
11FV|1|I|G|1266
11FV|1|I|U|1267
11FV|1|I|A|1268
11FV|1|I|A|1269
*
11FV|1|I|U|2011
11FV|1|I|G|2012
11FV|1|I|A|2013
11FV|1|I|A|2014
11FV|1|I|A|2015
11FV|1|I|U|2016
11FV|1|I|U|2017

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein uL22

Chain M

Large ribosomal subunit protein uL4

Chain i

50S ribosomal protein L32