IL_11FV_131

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

11FV|1|I|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_131 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0713

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

11FV|1|I|U|1712
11FV|1|I|A|1713
11FV|1|I|U|1714
11FV|1|I|G|1715
11FV|1|I|U|1716
11FV|1|I|A|1717
11FV|1|I|G|1718
*
11FV|1|I|U|1742
11FV|1|I|G|1743
11FV|1|I|A|1744
11FV|1|I|A|1745
11FV|1|I|A|1746

Current chains

Chain I

23S ribosomal RNA

Nearby chains