IL_11FV_178

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUCCC*GAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_178 not in the Motif Atlas

Geometric match to IL_8B0X_172

Geometric discrepancy: 0.0992

The information below is about IL_8B0X_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18472.5

Basepair signature

cWW-tSW-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

11FV|1|J|G|23
11FV|1|J|G|24
11FV|1|J|U|25
11FV|1|J|C|26
11FV|1|J|C|27
11FV|1|J|C|28
*
11FV|1|J|G|56
11FV|1|J|A|57
11FV|1|J|A|58
11FV|1|J|A|59
11FV|1|J|C|60

Current chains

Chain J

5S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL5

Chain W

Large ribosomal subunit protein uL18