IL_11GG_025

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GU*AAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_025 not in the Motif Atlas

Homologous match to IL_6CZR_137

Geometric discrepancy: 0.216

The information below is about IL_6CZR_137

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

11GG|1|C|G|591
11GG|1|C|U|592
*
11GG|1|C|A|634
11GG|1|C|A|635
11GG|1|C|A|636
11GG|1|C|C|637

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain o

Small ribosomal subunit protein uS8

Chain y

Small ribosomal subunit protein uS17