IL_11GG_070

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_070 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0833

The information below is about IL_8B0X_071

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

11GG|1|I|C|239
11GG|1|I|C|240
11GG|1|I|A|241
11GG|1|I|G|242
11GG|1|I|U|243
11GG|1|I|A|244
11GG|1|I|G|245
*
11GG|1|I|C|253
11GG|1|I|G|254
11GG|1|I|A|255
11GG|1|I|A|256
11GG|1|I|C|257
11GG|1|I|G|258

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL15

Chain l

50S ribosomal protein L35