IL_11GG_075

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_075 not in the Motif Atlas

Homologous match to IL_7A0S_011

Geometric discrepancy: 0.1312

The information below is about IL_7A0S_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

11GG|1|I|C|564
11GG|1|I|C|565
11GG|1|I|U|566
*
11GG|1|I|A|575
11GG|1|I|U|576
11GG|1|I|G|577

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL4

Chain T

Large ribosomal subunit protein uL15

Chain Y

50S ribosomal protein L20

Chain Z

Ribosomal protein L21