IL_11GG_118

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

11GG|1|I|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_118 not in the Motif Atlas

Geometric match to IL_8B0X_118

Geometric discrepancy: 0.107

The information below is about IL_8B0X_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.5

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

11GG|1|I|U|1468
11GG|1|I|A|1469
11GG|1|I|A|1470
11GG|1|I|G|1471
*
11GG|1|I|U|1520
11GG|1|I|G|1521
11GG|1|I|A|1522
11GG|1|I|U|1523
11GG|1|I|G|1524

Current chains

Chain I

23S ribosomal RNA

Nearby chains