IL_11GG_177

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_177 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.3748

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

11GG|1|I|U|2847
11GG|1|I|G|2848
11GG|1|I|U|2849
11GG|1|I|A|2850
11GG|1|I|A|2851
11GG|1|I|G|2852
*
11GG|1|I|U|2865
11GG|1|I|U|2866
11GG|1|I|G|2867
11GG|1|I|A|2868
11GG|1|I|G|2869

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein bL17

Chain X

Large ribosomal subunit protein bL19