IL_11HE_109

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_109 not in the Motif Atlas

Homologous match to IL_9H3G_097

Geometric discrepancy: 0.1528

The information below is about IL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.3

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

5

Unit IDs

11HE|1|28|U|3715
11HE|1|28|C|3716
11HE|1|28|A|3717
11HE|1|28|A|3718
11HE|1|28|A|3719
11HE|1|28|G|3720
11HE|1|28|U|3721
*
11HE|1|28|A|3732
11HE|1|28|A|3733
11HE|1|28|U|3734
11HE|1|28|G|3735
11HE|1|28|A|3736
11HE|1|28|A|3737
11HE|1|28|G|3738

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 36

60S ribosomal protein L36

Chain 42

eL42

Chain L8

60S ribosomal protein L8