IL_11HE_133
3D structure
- PDB id
- 11HE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV closed
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CAUUG*CCAAGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HE_133 not in the Motif Atlas
- Geometric match to IL_8GLP_315
- Geometric discrepancy: 0.0731
- The information below is about IL_8GLP_315
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56912.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
11HE|1|28|C|4466
11HE|1|28|A|4467
11HE|1|28|U|4468
11HE|1|28|U|4469
11HE|1|28|G|4470
*
11HE|1|28|C|4485
11HE|1|28|C|4486
11HE|1|28|A|4487
11HE|1|28|A|4488
11HE|1|28|G|4489
11HE|1|28|C|4490
11HE|1|28|G|4491
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 23
- 60S ribosomal protein L23
- Chain 40
- Large ribosomal subunit protein eL40
- Chain L3
- 60S ribosomal protein L3
- Chain L9
- 60S ribosomal protein L9
- Chain bb
- Large ribosomal subunit protein uL13
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