Motif IL_56912.1 Version IL_56912.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-6 | 4-7 | 4-8 | 5-10 | 6-9 | 7-8 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5XTM_006 | 5XTM | 0.0000 | 0 | D | RNA (47-MER) | G | 8 | A | 9 | U | 10 | G | 11 | A | 12 | A | 13 | A | 14 | * | U | 35 | A | 36 | A | 37 | C | 38 | C | 39 | cWW | ncWWa | cWw | cWW | |||||
| 2 | IL_8GLP_315 | 8GLP | 0.9350 | 0 | L5 | LSU rRNA | C | 4485 | C | 4486 | A | 4487 | A | 4488 | G | 4489 | C | 4490 | G | 4491 | * | C | 4466 | A | 4467 | U | 4468 | U | 4469 | G | 4470 | cWW | cWW | ntSH | cSH | ncSH | cWB | cWW | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUGAAA*UAACC | 1 |
| CCAAGCG*CAUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGAA*AAC | 1 |
| CAAGC*AUU | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-cWW
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: