IL_11HE_140
3D structure
- PDB id
- 11HE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV closed
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HE_140 not in the Motif Atlas
- Homologous match to IL_8GLP_159
- Geometric discrepancy: 0.0922
- The information below is about IL_8GLP_159
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34443.2
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
11HE|1|28|C|4596
11HE|1|28|U|4597
11HE|1|28|C|4598
11HE|1|28|A|4599
11HE|1|28|G|4600
11HE|1|28|U|4601
11HE|1|28|A|4602
11HE|1|28|C|4603
*
11HE|1|28|G|4608
11HE|1|28|G|4609
11HE|1|28|A|4610
11HE|1|28|A|4611
11HE|1|28|C|4612
11HE|1|28|C|4613
11HE|1|28|G|4614
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 23
- 60S ribosomal protein L23
- Chain 40
- Large ribosomal subunit protein eL40
- Chain L3
- 60S ribosomal protein L3
- Chain L9
- 60S ribosomal protein L9
- Chain v
- Elongation factor 2
Coloring options: