IL_8GLP_159

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_159 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.0912

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8GLP|1|L5|C|4596
8GLP|1|L5|U|4597
8GLP|1|L5|C|4598
8GLP|1|L5|A|4599
8GLP|1|L5|G|4600
8GLP|1|L5|U|4601
8GLP|1|L5|A|4602
8GLP|1|L5|C|4603
*
8GLP|1|L5|G|4608
8GLP|1|L5|G|4609
8GLP|1|L5|A|4610
8GLP|1|L5|A|4611
8GLP|1|L5|C|4612
8GLP|1|L5|C|4613
8GLP|1|L5|G|4614

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LH

60S ribosomal protein L9

Chain LV

60S ribosomal protein L23

Chain Lm

60S ribosomal protein L40 (eL40)