IL_11HE_162
3D structure
- PDB id
- 11HE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV closed
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HE_162 not in the Motif Atlas
- Homologous match to IL_8QYX_169
- Geometric discrepancy: 0.0466
- The information below is about IL_8QYX_169
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62879.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
11HE|1|5|G|71
11HE|1|5|U|72
11HE|1|5|U|73
11HE|1|5|A|74
11HE|1|5|G|75
11HE|1|5|U|76
11HE|1|5|A|77
11HE|1|5|C|78
*
11HE|1|5|G|98
11HE|1|5|G|99
11HE|1|5|A|100
11HE|1|5|A|101
11HE|1|5|U|102
11HE|1|5|A|103
11HE|1|5|C|104
Current chains
- Chain 5
- 5S rRNA
Nearby chains
- Chain 10
- Ribosomal protein L10
- Chain 20
- Large ribosomal subunit protein eL20
- Chain 21
- 60S ribosomal protein L21
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain L5
- 60S ribosomal protein L5
- Chain L7
- 60S ribosomal protein L7
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