IL_11HE_167

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

ACGAG*CGACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_167 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.2944

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.5

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

11HE|1|ES|A|2952
11HE|1|ES|C|2953
11HE|1|ES|G|2954
11HE|1|ES|A|2955
11HE|1|ES|G|2956
*
11HE|1|ES|C|3238
11HE|1|ES|G|3239
11HE|1|ES|A|3240
11HE|1|ES|C|3241
11HE|1|ES|U|3242

Current chains

Chain ES

ES27L

Nearby chains

Chain EB

Proliferation-associated protein 2G4