Motif IL_71154.5 Version IL_71154.5 of this group appears in releases 4.10 to 4.10

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10	1-10	2-8	2-9	3-7	3-8	4-7	5-6
1	IL_4LFB_065	4LFB	0.6138	0	Triple non-canonical cWW pairs	A	SSU rRNA	G	713	G	714	A	715	A	716	C	717	*	G	673	G	674	A	675	A	676	U	677	ncWWa		cWW		ncwW	cWW	cWW
2	IL_8B0X_176	8B0X	0.6249	0	Triple non-canonical cWW pairs (H)	A	SSU rRNA	G	713	G	714	A	715	A	716	U	717	*	A	673	G	674	A	675	A	676	U	677	cWWa		cWW		ncwW	cWW	cWW
3	IL_8D29_010	8D29	0.5443	0	Partly complementary	C	RNA (34-MER)	G	4	A	5	U	6	A	7	C	8	*	G	27	C	28	A	29	G	30	C	31	cWW		cWW		ncWW	ncWW	cWW
4	IL_9JA9_001	9JA9	0.4876	0		A	Theophylline aptamer	G	26	C	27	A	28	G	29	C	30	*	G	4	A	5	U	6	A	7	C	8	cWW		cWW		ntHS	cWW	cWW
5	IL_7VYX_004	7VYX	0.4800	0	Partly complementary	C	sgRNA	U	37	U	38	A	39	U	40	C	41	*	G	21	G	22	A	23	U	24	G	25	ncWW		ncwW		ncwW	ncWWa	cWW
6	IL_7VYX_008	7VYX	0.3583	0	Partly complementary	C	sgRNA	G	51	U	52	G	53	C	54	C	55	*	G	11	A	12	C	13	U	14	U	15	ncWWa		ncwW		ncWW	ncWWa	cWW
7	IL_8S95_002	8S95	0.1866	0	Triple non-canonical cWW pairs	C	Enterovirus 5' cloverleaf cis-acting replication element	C	101	C	102	U	103	U	104	G	105	*	C	84	U	85	C	86	C	87	G	88	cWW		ncwW		cWW	ncWw	cWW
8	IL_9D9O_002	9D9O	0.1473	0		R	Enterovirus 5' cloverleaf cis-acting replication element	C	54	U	55	C	56	U	57	G	58	*	C	71	U	72	U	73	U	74	G	75	cWW		cwW		ncWW	cWw	cWW
9	IL_8VMB_003	8VMB	0.1248	0	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	51	U	52	C	53	C	54	U	55	*	A	68	C	69	U	70	U	71	G	72	cWW		cwW		cWW	ncwW	cWW
10	IL_8VMA_004	8VMA	0.0000	0	Triple non-canonical cWW pairs	C	Enterovirus 5' cloverleaf cis-acting replication element	C	51	U	52	C	53	C	54	U	55	*	A	71	C	72	U	73	U	74	G	75	cWW		cwW		ncWW	ncWw	cWW
11	IL_9D9P_003	9D9P	0.1154	0		R	Enterovirus 5' cloverleaf cis-acting replication element	C	54	U	55	C	56	U	57	G	58	*	C	71	U	72	U	73	U	74	G	75	cWW		cwW	ncWW	cWW	cWw	cWW
12	IL_8VM8_003	8VM8	0.1428	0	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	54	U	55	C	56	U	57	G	58	*	C	74	U	75	U	76	U	77	G	78	cWW		cwW		cWW	cWw	cWW
13	IL_8VM9_004	8VM9	0.1289	0	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	68	U	69	U	70	U	71	G	72	*	C	48	U	49	C	50	U	51	G	52	cWW	ncWW	cwW		cWW	cWw	cWW
14	IL_8DP3_002	8DP3	0.1459	0	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	54	U	55	C	56	U	57	G	58	*	C	71	U	72	U	73	U	74	G	75	cWW		cwW	ncWW	cWW	cWw	cWW
15	IL_8SP9_002	8SP9	0.1708	0	Triple non-canonical cWW pairs	C	Enterovirus 5' cloverleaf cis-acting replication element	C	99	U	100	U	101	U	102	G	103	*	C	82	U	83	C	84	U	85	G	86	cWW		ncwW		ncWW	cWw	cWW
16	IL_5BTM_001	5BTM	0.2043	0	Triple non-canonical cWW pairs	A	RNA (55-mer)	U	10	U	11	C	12	U	13	A	14	*	U	42	U	43	C	44	U	45	A	46	cWW	ncWW	cwW		ncWw	cwW	cWW
17	IL_9H3G_139	9H3G	0.3364	0		A	LSU rRNA	G	3238	U	3239	U	3240	U	3241	G	3242	*	C	3221	G	3222	U	3223	U	3224	C	3225	cWW		ncwW		ncWw		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCUG*CUUUG	4
CUCCU*ACUUG	2
CUUUG*CUCUG	2
GGAAC*GGAAU	1
GGAAU*AGAAU	1
GAUAC*GCAGC	1
GCAGC*GAUAC	1
UUAUC*GGAUG	1
GUGCC*GACUU	1
CCUUG*CUCCG	1
UUCUA*UUCUA	1
GUUUG*CGUUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCU*UUU	4
GAA*GAA	2
UCC*CUU	2
UUU*UCU	2
AUA*CAG	1
CAG*AUA	1
UAU*GAU	1
UGC*ACU	1
CUU*UCC	1
UCU*UCU	1
UUU*GUU	1

Release history

Release	4.10
Date	2026-05-20
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple non-canonical cWW pairs (9)
(4)
Partly complementary (3)
Triple non-canonical cWW pairs (H) (1)
Basepair signature: cWW-cWW-cWW-cWW-cWW
Heat map statistics: Min 0.06 | Avg 0.36 | Max 0.64

Help

Coloring options: Nucleotide numbers

Copyright 2026 BGSU RNA group. Page generated in 0.1131 s