IL_11HG_027
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 11HG|1|18|A|628
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HG_027 not in the Motif Atlas
- Homologous match to IL_9H3G_187
- Geometric discrepancy: 0.1851
- The information below is about IL_9H3G_187
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
11HG|1|18|G|611
11HG|1|18|U|612
11HG|1|18|G|613
11HG|1|18|C|614
11HG|1|18|C|615
11HG|1|18|A|616
11HG|1|18|G|617
*
11HG|1|18|C|624
11HG|1|18|G|625
11HG|1|18|G|626
11HG|1|18|U|627
11HG|1|18|A|628
11HG|1|18|A|629
11HG|1|18|U|630
11HG|1|18|U|631
11HG|1|18|C|632
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain LA
- La-related protein 1
- Chain RR
- uS12
- Chain S3
- Small ribosomal subunit protein uS3
- Chain YY
- 40S ribosomal protein S30
- Chain v
- Elongation factor 2
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