IL_9H3G_187
3D structure
- PDB id
- 9H3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.82 Å
Loop
- Sequence
- GUGCCAG*CGG(OMU)AA(PSU)UC
- Length
- 16 nucleotides
- Bulged bases
- 9H3G|1|h1|A|581, 9H3G|1|h1|PSU|583, 9H3G|1|h1|U|584
- QA status
- Modified nucleotides: OMU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H3G|1|h1|G|564
9H3G|1|h1|U|565
9H3G|1|h1|G|566
9H3G|1|h1|C|567
9H3G|1|h1|C|568
9H3G|1|h1|A|569
9H3G|1|h1|G|570
*
9H3G|1|h1|C|577
9H3G|1|h1|G|578
9H3G|1|h1|G|579
9H3G|1|h1|OMU|580
9H3G|1|h1|A|581
9H3G|1|h1|A|582
9H3G|1|h1|PSU|583
9H3G|1|h1|U|584
9H3G|1|h1|C|585
Current chains
- Chain h1
- Ribosomal RNA 18S
Nearby chains
- Chain AA
- Small ribosomal subunit protein uS3z
- Chain B1
- Messenger RNA (poly-U)
- Chain Pa
- Small ribosomal subunit protein eS30z/eS30y/eS30x
- Chain Va
- Small ribosomal subunit protein uS12y
- Chain i2
- Transfer RNA; tRNA
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