IL_11HG_044

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_044 not in the Motif Atlas

Homologous match to IL_9PN5_186

Geometric discrepancy: 0.1182

The information below is about IL_9PN5_186

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

11HG|1|18|G|942
11HG|1|18|U|943
11HG|1|18|A|944
11HG|1|18|U|945
*
11HG|1|18|A|981
11HG|1|18|G|982
11HG|1|18|A|983
11HG|1|18|C|984

Current chains

Chain 18

18S rRNA

Nearby chains

Chain AS

40S ribosomal protein S3a

Chain GG

Small ribosomal subunit protein uS11

Chain L8

60S ribosomal protein L8

Chain UU

eS26