IL_11HG_049
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HG_049 not in the Motif Atlas
- Geometric match to IL_3IGI_015
- Geometric discrepancy: 0.3781
- The information below is about IL_3IGI_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02020.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
11HG|1|18|C|1098
11HG|1|18|G|1099
11HG|1|18|A|1100
11HG|1|18|U|1101
11HG|1|18|G|1102
11HG|1|18|C|1103
*
11HG|1|18|G|1129
11HG|1|18|G|1130
11HG|1|18|G|1131
11HG|1|18|C|1132
11HG|1|18|A|1133
11HG|1|18|G|1134
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain AS
- 40S ribosomal protein S3a
- Chain BB
- 40S_SA_C domain-containing protein
- Chain FF
- 40S ribosomal protein S13
- Chain RS
- 40S ribosomal protein S17
- Chain UU
- eS26
- Chain VV
- 40S ribosomal protein S27
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