IL_11HG_052

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

11HG|1|18|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_052 not in the Motif Atlas

Homologous match to IL_9PN5_195

Geometric discrepancy: 0.112

The information below is about IL_9PN5_195

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

11HG|1|18|G|1203
11HG|1|18|A|1204
*
11HG|1|18|U|1694
11HG|1|18|A|1695
11HG|1|18|C|1696

Current chains

Chain 18

18S rRNA

Nearby chains

Chain LA

La-related protein 1

Chain S2

40S ribosomal protein S2

Chain UU

eS26