Motif IL_14190.4 Version IL_14190.4 of this group appears in releases 4.10 to 4.10

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-5	3-4
1	IL_9AXU_106	9AXU	0.8540		2	LSU rRNA	C	3065	A	3066	G	3067	*	C	3055	G	3056	cWW	cWW
2	IL_8B0X_095	8B0X	1.3086		a	LSU rRNA	U	897	A	898	C	899	*	G	882	G	883	ncWW	cWW
3	IL_9E9Q_004	9E9Q	1.4460		A	Sarbecovirus 5'UTR	U	62	A	63	G	64	*	C	73	G	74	cWW	cWW
4	IL_4V9F_032	4V9F	1.2838	Single bulged A	0	LSU rRNA	U	942	A	943	G	944	*	C	1023	G	1024	cWW	cWW
5	IL_3G9C_008	3G9C	1.1838		G+R	RNA (11-mer) + glmS ribozyme	C	5	A	6	G	7	*	C	52	G	53	cWW	cWW
6	IL_4WF9_098	4WF9	1.2719	Single bulged A	X	LSU rRNA	C	2628	A	2629	G	2630	*	C	2618	G	2619	cWW	cWW
7	IL_9H3G_110	9H3G	1.1576		A	LSU rRNA	C	2624	A	2625	C	2626	*	G	2613	G	2614	cWW	cWW
8	IL_9AXU_091	9AXU	1.2087	Single bulged A (H)	2	LSU rRNA	C	2720	A	2721	C	2722	*	G	2709	G	2710	cWW	cWW
9	IL_9PN5_094	9PN5	1.2034		A1	LSU rRNA	C	2625	A	2626	C	2627	*	G	2614	G	2615	cWW	cWW
10	IL_8GLP_137	8GLP	1.1948	Single bulged A (H)	L5	LSU rRNA	U	4202	A	4203	C	4204	*	G	4191	A	4192	cWW	cWW
11	IL_9E6Q_080	9E6Q	1.2114	Single bulged A (H)	1	LSU rRNA	C	2368	A	2369	C	2370	*	G	2357	G	2358	cWW	cWW
12	IL_4V9F_079	4V9F	1.1860	Single bulged A	0	LSU rRNA	U	2290	A	2291	C	2292	*	G	2279	A	2280	cWW	cWW
13	IL_7KGA_005	7KGA	1.0194	Single bulged A	B	Flavivirus DB element	U	39	A	40	G	41	*	C	14	A	15	cWW	cWW
14	IL_9H3G_126	9H3G	0.7937		A	LSU rRNA	C	2969	A	2970	G	2971	*	C	2959	G	2960	cWW	cWW
15	IL_4V9F_098	4V9F	0.5857	Single bulged A	0	LSU rRNA	C	2895	A	2896	C	2897	*	G	2860	G	2861	cWW	cWW
16	IL_9DFE_061	9DFE	0.8410	Single bulged A	1A	LSU rRNA	U	1489	A	1490	G	1491	*	C	1499	G	1500	cWW	cWW
17	IL_2OZB_003	2OZB	0.7936		F	RNA comprising the 5' Stem-Loop RNA of U4snRNA	U	24	A	25	G	26	*	C	47	G	48	cWW	cWW
18	IL_8B0X_121	8B0X	0.7544	Single bulged A (H)	a	LSU rRNA	C	1491	A	1492	G	1493	*	C	1501	G	1502	cWW	cWW
19	IL_8VMA_003	8VMA	0.4527	Single bulged A	C	Enterovirus 5' cloverleaf cis-acting replication element	U	46	A	47	G	48	*	C	78	G	79	cWW	cWW
20	IL_9DFE_047	9DFE	0.4589	Single bulged A	1A	LSU rRNA	G	1219	A	1220	C	1221	*	G	1229	C	1230	cWW	cWW
21	IL_9PN5_043	9PN5	0.6332		A1	LSU rRNA	U	1074	A	1075	C	1076	*	G	1083	A	1084	cWW	cWW
22	IL_8CRE_443	8CRE	0.6130	Single bulged A	CM	SSU rRNA	U	1617	A	1618	C	1619	*	G	1131	A	1132	cWW	cWW
23	IL_8GLP_249	8GLP	0.5967	Single bulged A (H)	S2	SSU rRNA	U	1694	A	1695	C	1696	*	G	1203	A	1204	cWW	cWW
24	IL_9PN5_195	9PN5	0.5920		B5	SSU rRNA	U	1630	A	1631	C	1632	*	G	1146	A	1147	cWW	cWW
25	IL_4LFB_035	4LFB	0.5908	Single bulged A	A	SSU rRNA	U	1393	A	1394	C	1395	*	G	922	A	923	cWW	cWW
26	IL_9H3G_210	9H3G	0.5812		h1	SSU rRNA	U	1632	A	1633	C	1634	*	G	1147	A	1148	cWW	cWW
27	IL_8B0X_038	8B0X	0.5538	Single bulged A (H)	A	SSU rRNA	U	1393	A	1394	C	1395	*	G	922	A	923	cWW	cWW
28	IL_8VFS_002	8VFS	0.3420	Single bulged A	A+B	RNA (27-MER)	A	11	A	12	G	13	*	C	17	U	18	cWW	cWW
29	IL_5AOX_002	5AOX	0.5132	Single bulged A	C	ALU JO CONSENSUS RNA	G	56	A	57	G	58	*	C	108	C	109	cWW	cWW
30	IL_9DE7_002	9DE7	0.4931	Single bulged A	A	RNA (58-MER)	A	15	A	16	G	17	*	C	45	U	46	cWW	cWW
31	IL_3CGP_002	3CGP	0.5235	Single bulged A	B+A	RNA (13-mer)	U	19	A	20	A	21	*	PSU	6	A	7	cWW	cWW
32	IL_8OI5_113	8OI5	0.6335	Single bulged A (H)	1	LSU rRNA	C	2942	A	2943	G	2944	*	C	2932	G	2933	cWW	cWW
33	IL_8VM9_003	8VM9	0.4149	Single bulged A	R	Enterovirus 5' cloverleaf cis-acting replication element	U	43	A	44	G	45	*	C	75	G	76	cWW	cWW
34	IL_1MFQ_005	1MFQ	0.7249	Single bulged A	A	SRP RNA	G	175	A	176	G	177	*	C	220	C	221	cWW	cWW
35	IL_8UIW_001	8UIW	0.6219	Single bulged A	N	azaaromatic riboswitch aptamer (yjdF RNA)	G	44	A	45	U	46	*	A	63	C	64	cWW	cWW
36	IL_9CFN_004	9CFN	0.4956		B	RNA (59-MER)	G	30	A	31	G	32	*	C	10	C	11	cWW	cWW
37	IL_7JJU_002	7JJU	0.6045	Single bulged A	A	PLRV_xrRNA	C	31	A	32	U	33	*	A	12	G	13	cWW	cWW
38	IL_7JJU_004	7JJU	0.6054	Single bulged A	B	PLRV_xrRNA	C	31	A	32	U	33	*	A	12	G	13	cWW	cWW
39	IL_6CYT_001	6CYT	0.6999	Single bulged A	N	RNA (17-mer)	G	34	A	35	G	36	*	C	29	C	30	cWW	cWW
40	IL_9PN5_119	9PN5	0.7078		A1	LSU rRNA	G	3177	A	3178	U	3179	*	A	3210	C	3211	cWW	cWW
41	IL_8OI5_122	8OI5	0.6390	Single bulged A (H)	1	LSU rRNA	G	3147	A	3148	U	3149	*	A	3175	C	3176	cWW	cWW
42	IL_1U63_004	1U63	0.4918	Single bulged A	D	49 NT FRAGMENT OF MRNA FOR L1	G	28	A	29	A	30	*	U	16	C	17	cWW	cWW
43	IL_4WF9_006	4WF9	0.5757	Single bulged A	X	LSU rRNA	C	175	A	176	G	177	*	C	152	G	153	cWW	cWW
44	IL_2QUX_002	2QUX	0.6555	Single bulged A	F	RNA (25-MER)	C	5	A	6	G	7	*	C	20	G	21	cWW	cWW
45	IL_6WPI_001	6WPI	0.5238	Single bulged A	B	RNA (47-MER)	G	11	A	12	A	13	*	U	41	C	42	cWW	cWW
46	IL_8GLP_032	8GLP	0.3662		L5	LSU rRNA	G	508	A	509	U	510	*	A	649	C	650	cWW	cWW
47	IL_9E6Q_092	9E6Q	0.4215		1	LSU rRNA	C	2715	A	2716	G	2717	*	C	2705	G	2706	cWW	cWW
48	IL_8VFS_004	8VFS	0.5744	Single bulged A	B+A	RNA (27-MER)	U	10	A	11	A	12	*	U	18	G	19	cWW	cWW
49	IL_9H3G_181	9H3G	0.4778		h1	SSU rRNA	A	507	A	508	U	509	*	A	483	U	484	cWW	cWW
50	IL_9PN5_109	9PN5	0.5399		A1	LSU rRNA	C	2970	A	2971	G	2972	*	C	2960	G	2961	cWW	cWW
51	IL_9C75_002	9C75	0.6984	Single bulged A	R	Rev Response Element	G	30	A	31	C	32	*	G	13	C	14	cWW	cWW
52	IL_2VPL_002	2VPL	0.4440	Single bulged A	B	FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE	G	28	A	29	A	30	*	U	16	C	17	cWW	cWW
53	IL_8GLP_041	8GLP	0.4676		L5	LSU rRNA	C	1237	A	1238	C	1239	*	G	1073	G	1074	cWW	cWW
54	IL_4R4V_004	4R4V	0.5898	Single bulged A	A	VS ribozyme RNA	U	712	A	713	G	714	*	C	660	A	661	cWW	cWW
55	IL_9H3G_135	9H3G	0.5452		A	LSU rRNA	G	3170	A	3171	C	3172	*	G	3199	C	3200	cWW	cWW
56	IL_4AOB_001	4AOB	0.4491	Single bulged A	A	SAM-I riboswitch	G	13	A	14	G	15	*	C	40	C	41	cWW	cWW
57	IL_9PN5_059	9PN5	0.5165		A1	LSU rRNA	U	1398	A	1399	G	1400	*	C	1411	G	1412	cWW	cWW
58	IL_9DID_002	9DID	0.5800	Single bulged A	A	frameshifting pseudoknot RNA	U	35	A	36	U	37	*	A	48	A	49	cWW	cWW
59	IL_8GLP_154	8GLP	0.3506		L5	LSU rRNA	C	4547	A	4548	G	4549	*	C	4537	G	4538	cWW	cWW
60	IL_8B0X_159	8B0X	0.4324	Single bulged A (H)	a	LSU rRNA	C	2605	A	2606	G	2607	*	C	2595	G	2596	cWW	cWW
61	IL_3CGS_002	3CGS	0.4921	Single bulged A	B+A	RNA (13-mer)	G	20	A	21	C	22	*	G	5	PSU	6	cWW	cWW
62	IL_3CGR_002	3CGR	0.6099	Single bulged A	B+A	RNA (13-mer)	A	19	A	20	C	21	*	G	6	PSU	7	cWW	cWW
63	IL_1CSL_002	1CSL	0.4000	Single bulged A	B+A	RNA (15-mer)	G	67	A	68	C	69	*	G	50	C	51	cWW	cWW
64	IL_1I9X_002	1I9X	0.3763	Single bulged A	B+A	RNA (13-mer)	U	4	A	5	A	6	*	U	9	A	10	cWW	cWW
65	IL_9DID_005	9DID	0.4933	Single bulged A	B	frameshifting pseudoknot RNA	U	35	A	36	U	37	*	A	48	A	49	cWW	cWW
66	IL_9AXU_017	9AXU	0.4258		2	LSU rRNA	C	601	A	602	C	603	*	G	523	G	524	cWW	cWW
67	IL_8OI5_020	8OI5	0.4266	Single bulged A (H)	1	LSU rRNA	C	575	A	576	G	577	*	C	508	G	509	cWW	cWW
68	IL_9PN5_017	9PN5	0.4687		A1	LSU rRNA	C	577	A	578	G	579	*	U	512	G	513	cWW	cWW
69	IL_4P3U_011	4P3U	0.5541	Single bulged A	C+D	RNA (23-mer)	A	17	A	18	G	19	*	C	30	U	31	cWW	cWW
70	IL_4P3U_005	4P3U	0.4846	Single bulged A	A+B	RNA (23-mer)	A	17	A	18	G	19	*	C	30	U	31	cWW	cWW
71	IL_4P3U_008	4P3U	0.5047	Single bulged A	D+C	RNA (23-mer)	A	40	A	41	G	42	*	C	7	U	8	cWW	cWW
72	IL_1EFO_002	1EFO	0.3602	Single bulged A	B+A	RNA (10-mer)	G	15	A	16	G	17	*	DC	3	DC	4	cWW	cWW
73	IL_4R4V_003	4R4V	0.3755	Single bulged A	A	VS ribozyme RNA	C	651	A	652	G	653	*	C	766	G	767	cWW	cWW
74	IL_6MSF_001	6MSF	0.4519	Single bulged A	R	RNA (14-mer)	C	2\|\|\|\|P_1	A	3\|\|\|\|P_1	C	4\|\|\|\|P_1	*	G	12\|\|\|\|P_1	G	13\|\|\|\|P_1	cWW	cWW
75	IL_2C4Q_001	2C4Q	0.4954	Single bulged A	R	RNA (19-mer)	G	5\|\|\|\|P_1	A	6\|\|\|\|P_1	G	7\|\|\|\|P_1	*	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	cWW	cWW
76	IL_9DFE_058	9DFE	0.7266	Single bulged A	1A	LSU rRNA	G	1459	A	1460	G	1461	*	C	1450\|\|\|A	C	1451	cWW	cWW
77	IL_8B0X_166	8B0X	0.5667		a	LSU rRNA	G	2803	A	2804	G	2805	*	C	2799	C	2800	cWW	cWW
78	IL_4WF9_022	4WF9	0.5631	Single bulged A	X	LSU rRNA	G	808	A	809	A	810	*	U	742	C	743	cWW	cWW
79	IL_9H3G_035	9H3G	0.5431		A	LSU rRNA	G	904	A	905	C	906	*	G	837	C	838	cWW	cWW
80	IL_8GLP_057	8GLP	0.5216	Single bulged A (H)	L5	LSU rRNA	G	1612	A	1613	C	1614	*	G	1545	C	1546	cWW	cWW
81	IL_9AXU_027	9AXU	0.5547	Single bulged A (H)	2	LSU rRNA	A	927	A	928	U	929	*	A	860	U	861	cWW	cWW
82	IL_9PN5_028	9PN5	0.5453		A1	LSU rRNA	A	895	A	896	U	897	*	A	828	U	829	cWW	cWW
83	IL_9E6Q_027	9E6Q	0.5253	Single bulged A (H)	1	LSU rRNA	G	881	A	882	C	883	*	G	814	C	815	cWW	cWW
84	IL_4V9F_025	4V9F	0.5512	Single bulged A	0	LSU rRNA	G	856	A	857	U	858	*	A	788	C	789	cWW	cWW
85	IL_8B0X_081	8B0X	0.5883	Single bulged A (H)	a	LSU rRNA	G	765	A	766	C	767	*	G	699	C	700	cWW	cWW
86	IL_9DFE_017	9DFE	0.5371	Single bulged A	1A	LSU rRNA	G	763	A	764	G	765	*	C	697	C	698	cWW	cWW
87	IL_7A0S_016	7A0S	0.5585	Single bulged A	X	LSU rRNA	G	776	A	777	G	778	*	C	710	C	711	cWW	cWW
88	IL_8OI5_031	8OI5	0.5227	Single bulged A (H)	1	LSU rRNA	A	891	A	892	U	893	*	A	824	U	825	cWW	cWW
89	IL_9H3G_030	9H3G	0.3994		A	LSU rRNA	G	788	A	789	G	790	*	C	761	C	762	cWW	cWW
90	IL_9AXU_023	9AXU	0.3982	Single bulged A (H)	2	LSU rRNA	G	811	A	812	G	813	*	C	780	C	781	cWW	cWW
91	IL_9PN5_023	9PN5	0.4051		A1	LSU rRNA	G	779	A	780	G	781	*	C	752	C	753	cWW	cWW
92	IL_8GLP_053	8GLP	0.3945	Single bulged A (H)	L5	LSU rRNA	G	1496	A	1497	G	1498	*	C	1467	C	1468	cWW	cWW
93	IL_8OI5_026	8OI5	0.4148	Single bulged A (H)	1	LSU rRNA	G	775	A	776	G	777	*	C	748	C	749	cWW	cWW
94	IL_1JZV_002	1JZV	0.4505	Single bulged A	B+A	RNA (9-mer)	U	12	A	13	C	14	*	G	4	A	5	cWW	cWW
95	IL_4L8H_001	4L8H	0.5638	Single bulged A	R	RNA operator hairpin	C	4	A	5	U	6	*	A	16	G	17	cWW	cWW
96	IL_4P3U_002	4P3U	0.3776	Single bulged A	B+A	RNA (23-mer)	A	40	A	41	G	42	*	C	7	U	8	ncWW	cWW
97	IL_9AXU_125	9AXU	0.5935	Single bulged A (H)	3	5S rRNA	G	62	A	63	G	64	*	C	15	U	16	cWW	cWW
98	IL_9PN5_133	9PN5	0.5439		A3	5S rRNA	A	63	A	64	G	65	*	C	15	U	16	cWW	cWW
99	IL_8OI5_134	8OI5	0.5513	Single bulged A	3	5S rRNA	A	63	A	64	G	65	*	C	15	U	16	cWW	cWW
100	IL_7A0S_012	7A0S	0.4756	Single bulged A	X	LSU rRNA	G	600	A	601	C	602	*	G	678	C	679	cWW	cWW
101	IL_7A0S_064	7A0S	0.3977	Single bulged A	X	LSU rRNA	G	1963	A	1964	U	1965	*	G	1761	C	1762	cWW	cWW
102	IL_8B0X_131	8B0X	0.3918	Single bulged A (H)	a	LSU rRNA	G	1984	A	1985	U	1986	*	G	1772	C	1773	cWW	cWW
103	IL_4WF9_068	4WF9	0.4102	Single bulged A	X	LSU rRNA	G	2007	A	2008	U	2009	*	G	1797	C	1798	cWW	cWW
104	IL_8OI5_084	8OI5	0.3813	Single bulged A (H)	1	LSU rRNA	G	2301	A	2302	G	2303	*	C	2106	U	2107	cWW	cWW
105	IL_9AXU_078	9AXU	0.3866	Single bulged A (H)	2	LSU rRNA	G	2411	A	2412	G	2413	*	C	2216	U	2217	cWW	cWW
106	IL_9PN5_080	9PN5	0.3714		A1	LSU rRNA	G	2323	A	2324	G	2325	*	C	2128	PSU	2129	cWW	cWW
107	IL_9E6Q_067	9E6Q	0.3545	Single bulged A (H)	1	LSU rRNA	G	2101	A	2102	OMG	2103	*	C	1906	U	1907	cWW	cWW
108	IL_9H3G_091	9H3G	0.3513		A	LSU rRNA	G	2321	A	2322	G	2323	*	C	2127	C	2128	cWW	cWW
109	IL_8GLP_113	8GLP	0.3584		L5	LSU rRNA	G	3827	A	3828	G	3829	*	C	3632	C	3633	cWW	cWW
110	IL_4V9F_064	4V9F	0.3931	Single bulged A	0	LSU rRNA	C	2021	A	2022	G	2023	*	C	1826	G	1827	cWW	cWW
111	IL_9DFE_069	9DFE	0.3896	Single bulged A	1A	LSU rRNA	G	1980	A	1981	C	1982	*	G	1770	C	1771	cWW	cWW
112	IL_8GLP_309	8GLP	0.4138		L5	LSU rRNA	G	4291	A	4292	PSU	4293	*	A	4317	C	4318	cWW	cWW
113	IL_9H3G_113	9H3G	0.1998		A	LSU rRNA	G	2713	A	2714	U	2715	*	A	2739	C	2740	cWW	cWW
114	IL_9AXU_093	9AXU	0.2545		2	LSU rRNA	G	2809	A	2810	U	2811	*	A	2835	C	2836	cWW	cWW
115	IL_7MKY_001	7MKY	0.3384	Single bulged A	A	RNA (66-MER)	G	49	A	50	U	51	*	A	35	C	36	cWW	cWW
116	IL_5WWT_001	5WWT	0.3016	Single bulged A	C	tRNA	G	37	A	38	U	39	*	A	31	C	32	cWW	cWW
117	IL_7DLZ_004	7DLZ	0.3804		Y	RNA (45-MER)	U	6	A	7	C	8	*	G	39	G	40	cWW	cWW
118	IL_9G4Q_001	9G4Q	0.3868		A	salivarius-1 RNA	G	22	A	23	U	24	*	A	11	C	12	cWW	cWW
119	IL_6XH2_002	6XH2	0.2317	Single bulged A	D	TRANS-ACTIVATION RESPONSE ELEMENT	G	34	A	35	G	36	*	C	29	C	30	cWW	cWW
120	IL_9H3G_168	9H3G	0.2415		h1	SSU rRNA	G	262	A	263	C	264	*	G	201	C	202	cWW	cWW
121	IL_4V9F_002	4V9F	0.2874	Single bulged A	0	LSU rRNA	G	448	A	449	C	450	*	G	33	C	34	cWW	cWW
122	IL_9PN5_156	9PN5	0.2577		B5	SSU rRNA	A	265	A	266	U	267	*	A	288	U	289	cWW	cWW
123	IL_9H3G_171	9H3G	0.2643		h1	SSU rRNA	G	266	A	267	U	268	*	A	290	C	291	cWW	cWW
124	IL_8GLP_207	8GLP	0.2920	Single bulged A (H)	S2	SSU rRNA	G	312	A	313	U	314	*	A	336	C	337	cWW	cWW
125	IL_5FJC_001	5FJC	0.5804	Single bulged A	A	SAM-I riboswitch	G	13	A	14\|\|A	G	15	*	C	40	C	41	cWW	cWW
126	IL_8VMB_002	8VMB	0.4258	Single bulged A	R	Enterovirus 5' cloverleaf cis-acting replication element	U	46	A	47	G	48	*	C	75	G	76	cWW	cWW
127	IL_9NLN_004	9NLN	0.5093		C	RNA (CVB3 IRES Domain V)	G	95	A	96	C	97	*	G	15	C	16	cWW	cWW
128	IL_9DFE_032	9DFE	0.2660	Single bulged A	1A	LSU rRNA	U	895	A	896	C	897	*	G	880	G	881	cWW	cWW
129	IL_9H3G_002	9H3G	0.1549		A+3	LSU rRNA	G	334	A	335	C	336	*	G	29	C	30	cWW	cWW
130	IL_9AXU_013	9AXU	0.0871	Single bulged A (H)	2+4	LSU rRNA + 5.8S rRNA	G	345	A	346	C	347	*	G	33	C	34	cWW	cWW
131	IL_8GLP_018	8GLP	0.0890	Single bulged A (H)	L5+L8	LSU rRNA + 5.8S rRNA	G	348	A	349	C	350	*	G	25	C	26	cWW	cWW
132	IL_8OI5_014	8OI5	0.0000	Single bulged A (H)	1+4	LSU rRNA + 5.8S rRNA	G	337	A	338	C	339	*	G	25	U	26	cWW	cWW
133	IL_9PN5_012	9PN5	0.0944		A1+A4	LSU rRNA + 5.8S rRNA	G	337	A	338	C	339	*	G	25	U	26	cWW	cWW
134	IL_4WF9_002	4WF9	0.2245	Single bulged A	X	LSU rRNA	G	488	A	489	C	490	*	G	36	C	37	cWW	cWW
135	IL_7A0S_002	7A0S	0.2590	Single bulged A	X	LSU rRNA	G	454	A	455	C	456	*	G	36	C	37	cWW	cWW
136	IL_9DFE_002	9DFE	0.2195	Single bulged A	1A	LSU rRNA	G	442	A	443	C	444	*	G	36	C	37	cWW	cWW
137	IL_8B0X_066	8B0X	0.2136	Single bulged A (H)	a	LSU rRNA	G	442	A	443	C	444	*	G	36	C	37	cWW	cWW
138	IL_1NBS_005	1NBS	0.2723	Single bulged A	B	RNase P class B	G	129	A	130	C	131	*	G	113	C	114	cWW	cWW
139	IL_1I9X_001	1I9X	0.2514	Single bulged A	A+B	RNA (13-mer)	U	4	A	5	A	6	*	U	9	A	10	cWW	cWW
140	IL_1U9S_001	1U9S	0.2979	Single bulged A	A	RNase P class A	G	107	A	108	C	109	*	G	95	C	96	cWW	cWW
141	IL_8GLP_097	8GLP	0.4161	Single bulged C (H)	L5	LSU rRNA	G	2724	A	2725	G	2726	*	C	2613	C	2614	cWW	cWW
142	IL_3B31_001	3B31	0.3030	Single bulged A	A	RNA (29-MER)	C	6181	A	6182	G	6183	*	C	6194	G	6195	cWW	cWW
143	IL_9H3G_063	9H3G	0.3832		A	LSU rRNA	U	1407	A	1408	G	1409	*	C	1420	G	1421	cWW	cWW
144	IL_8GLP_087	8GLP	0.3594	Single bulged A (H)	L5	LSU rRNA	U	2312	A	2313	G	2314	*	C	2325	G	2326	cWW	cWW
145	IL_8UO6_001	8UO6	0.5101	Single bulged A	A	HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold	G	60	A	61	C	62	*	G	42	C	43	cWW	cWW
146	IL_4PHY_004	4PHY	0.5455	Single bulged A	A+B	RNA (26-MER) + RNA (20-mer)	C	20	A	21	C	22	*	G	30	G	31	ncWW	cWW
147	IL_7VTI_001	7VTI	0.5745	Single bulged A	B	crRNA	U	31	A	32	C	33	*	G	4	G	5	cWW	cWW
148	IL_4LGT_002	4LGT	0.6296	Single bulged A	E	stem-loop of 23S rRNA	C	2601	A	2602	G	2603	*	C	2591	G	2592	cWW	cWW
149	IL_8OI5_019	8OI5	0.5714	Single bulged A (H)	1	LSU rRNA	G	505	A	506	G	507	*	C	578	C	579	cWW	cWW
150	IL_8X5V_002	8X5V	0.7559	Single bulged A	B	RNA (110-mer)	G	61	A	62	C	63	*	G	55	C	56	cWW	cWW
151	IL_7KGA_002	7KGA	0.8851	Single bulged A	A	Flavivirus DB element	U	39	A	40	G	41	*	C	14	A	15	cWW	cWW
152	IL_8XZL_003	8XZL	1.2146	Single bulged A	A	THF-II riboswitch (folE RNA)	G	32	A	33	C	34	*	G	27	C	28	cWW	cWW
153	IL_8OI5_059	8OI5	1.0417	Single bulged A (H)	1	LSU rRNA	C	1381	A	1382	G	1383	*	C	1416	G	1417	cWW	cWW
154	IL_9PN5_057	9PN5	1.0182		A1	LSU rRNA	C	1385	A	1386	G	1387	*	C	1420	G	1421	cWW	cWW
155	IL_3OXE_001	3OXE	0.8274	Single bulged A	A	Glycine riboswitch	G	12	A	13	A	14	*	U	27	C	28	cWW	cWW
156	IL_8GLP_085	8GLP	0.7672	Single bulged A (H)	L5	LSU rRNA	G	2299	A	2300	G	2301	*	C	2334	C	2335	cWW	cWW
157	IL_8B0X_048	8B0X	0.9553		A	SSU rRNA	C	1195	A	1196	A	1197	*	U	1060	G	1061	cWW	cWW
158	IL_9PN5_209	9PN5	0.7779		B5	SSU rRNA	C	1426	A	1427	G	1428	*	4AC	1280	G	1281	cWW	cWW
159	IL_8GLP_335	8GLP	0.7457	Single bulged A (H)	S2	SSU rRNA	C	1488	A	1489	OMG	1490	*	4AC	1337	G	1338	cWW	cWW
160	IL_9H3G_222	9H3G	0.7586		h1	SSU rRNA	C	1429	A	1430	OMG	1431	*	4AC	1281	G	1282	cWW	cWW
161	IL_8CRE_455	8CRE	0.7697	Single bulged A	CM	SSU rRNA	C	1412	A	1413	G	1414	*	C	1265	G	1266	cWW	cWW
162	IL_8CRE_416	8CRE	0.8168	Single bulged A	CM	SSU rRNA	A	503	A	504	U	505	*	A	479	U	480	cWW	cWW
163	IL_4LFB_002	4LFB	1.2449	Single bulged A	A	SSU rRNA	G	396	A	397	C	398	*	G	44	U	45	cWW	cWW
164	IL_8B0X_002	8B0X	1.1880	Single bulged A (H)	A	SSU rRNA	C	396	A	397	U	398	*	A	44	G	45	cWW	cWW
165	IL_4P97_002	4P97	1.1732	Single bulged A	B+A	RNA (11-mer)	G	38	A	39	G	40	*	C	12	C	13	cWW	cWW
166	IL_5CNR_002	5CNR	1.1394	Single bulged A	B+A	RNA (11-mer)	G	38	A	39	G	40	*	C	12	C	13	cWW	cWW
167	IL_4PHY_002	4PHY	1.1464	Single bulged A	B+A	RNA (20-mer)	G	38	A	39	G	40	*	C	12	C	13	cWW	cWW
168	IL_9DFE_100	9DFE	1.2287	Single bulged A	1A	LSU rRNA	C	2601	A	2602	G	2603	*	C	2591	G	2592	cWW	cWW
169	IL_9E6Q_024	9E6Q	1.3061		1	LSU rRNA	C	723	A	724	G	725	*	C	752	G	753	cWW	cWW
170	IL_8B0X_171	8B0X	1.6496	Major groove intercalation (H)	b	5S rRNA	U	65	A	66	G	67	*	C	17	G	18	cWW	cWW
171	IL_7JNH_003	7JNH	1.5977	Major groove intercalation	B	Core double ENE RNA (Xtal construct) from Oryza sativa transposon	U	55	A	56	C	57	*	G	35	G	36	cWW	cWW
172	IL_4WF9_112	4WF9	1.6477	Major groove intercalation	Y	5S rRNA	U	63	A	64	G	65	*	C	15	A	16	cWW	cWW
173	IL_9DFE_110	9DFE	1.6377	Major groove intercalation	1B	5S rRNA	C	65	A	66	G	67	*	C	17	G	18	cWW	cWW
174	IL_4V9F_101	4V9F	1.6834	Major groove intercalation	9	5S rRNA	C	64	A	65	G	66	*	C	15	G	16	cWW	cWW
175	IL_7DLZ_005	7DLZ	1.7713		Y	RNA (45-MER)	U	9	A	10	C	11	*	G	37	G	38	cWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAG*CC	26
GAC*GC	25
CAG*CG	24
GAU*AC	12
UAG*CG	11
UAC*GA	10
CAC*GG	9
AAG*CU	8
UAC*GG	6
AAU*AU	6
GAA*UC	5
UAG*CA	4
CAU*AG	4
GAG*CU	3
GAU*GC	3
GAC*GU	3
UAU*AA	2
UAA*UA	2
CA(OMG)*(4AC)G	2
UAA*(PSU)A	1
UAA*UG	1
GAC*G(PSU)	1
AAC*G(PSU)	1
CAG*UG	1
GAG*C(PSU)	1
GA(OMG)*CU	1
GA(PSU)*AC	1
CAA*UG	1
CAG*(4AC)G	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	175

Release history

Release	4.10
Date	2026-05-20
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Single bulged A (85)
(50)
Single bulged A (H) (34)
Major groove intercalation (4)
Major groove intercalation (H) (1)
Single bulged C (H) (1)
Basepair signature: cWW-L-cWW
Heat map statistics: Min 0.03 | Avg 0.82 | Max 2.08

Help

Coloring options: Nucleotide numbers

Motif IL_14190.4 Version IL_14190.4 of this group appears in releases 4.10 to 4.10 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_14190.4 Version IL_14190.4 of this group appears in releases 4.10 to 4.10

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