IL_11HG_071

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_071 not in the Motif Atlas

Homologous match to IL_9H3G_231

Geometric discrepancy: 0.3463

The information below is about IL_9H3G_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81485.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

32

Unit IDs

11HG|1|18|U|1560
11HG|1|18|A|1561
11HG|1|18|C|1562
*
11HG|1|18|G|1573
11HG|1|18|C|1574
11HG|1|18|G|1575

Current chains

Chain 18

18S rRNA

Nearby chains

Chain MM

Small ribosomal subunit protein eS19