Motif IL_81485.1 Version IL_81485.1 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-5 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9H3G_231 | 9H3G | 0.3116 | 0 | h1 | SSU rRNA | U | 1499 | U | 1500 | G | 1501 | * | C | 1512 | C | 1513 | G | 1514 | cWW | cWW | cWW | ||
| 2 | IL_8QYX_170 | 8QYX | 0.2527 | 0 | Isolated non-canonical cWW pair (H) | B2 | 5S rRNA | U | 79 | U | 80 | G | 81 | * | C | 95 | U | 96 | G | 97 | cWW | cWw | cWW | |
| 3 | IL_9H3G_152 | 9H3G | 0.2710 | 0 | Isolated non-canonical cWW pair (H) | C3 | 5S rRNA | U | 79 | A | 80 | G | 81 | * | C | 95 | C | 96 | G | 97 | cWW | cWW | cWW | |
| 4 | IL_8GLP_272 | 8GLP | 0.1643 | 0 | S2 | SSU rRNA | U | 1560 | A | 1561 | C | 1562 | * | G | 1573 | C | 1574 | G | 1575 | cWW | cWW | cWW | ||
| 5 | IL_9SUM_223 | 9SUM | 0.1293 | 0 | CA | SSU rRNA | U | 1640 | U | 1641 | A | 1642 | * | U | 1709 | U | 1710 | G | 1711 | cWW | cWW | |||
| 6 | IL_8GLP_281 | 8GLP | 0.1353 | 0 | Isolated non-canonical cWW pair (H) | S2 | SSU rRNA | U | 1729 | U | 1730 | A | 1731 | * | U | 1803 | OMU | 1804 | G | 1805 | cWW | cWW | ||
| 7 | IL_8CRE_473 | 8CRE | 0.1751 | 0 | Isolated non-canonical cWW pair | CM | SSU rRNA | U | 1652 | U | 1653 | A | 1654 | * | U | 1721 | U | 1722 | G | 1723 | ncWW | cWW | ||
| 8 | IL_7A0S_107 | 7A0S | 0.2149 | 0 | Isolated non-canonical cWW pair | Y | 5S rRNA | U | 82 | C | 83 | G | 84 | * | C | 97 | C | 98 | G | 99 | cWW | ncBW | cWW | |
| 9 | IL_9SUM_214 | 9SUM | 0.1960 | 0 | CA | SSU rRNA | U | 1471 | U | 1472 | G | 1473 | * | C | 1484 | U | 1485 | G | 1486 | cWW | cWW | |||
| 10 | IL_8CRE_464 | 8CRE | 0.2126 | 0 | Isolated non-canonical cWW pair | CM | SSU rRNA | U | 1483 | U | 1484 | G | 1485 | * | C | 1496 | U | 1497 | G | 1498 | cWW | cWW | ||
| 11 | IL_4KYY_002 | 4KYY | 0.2258 | 0 | Isolated non-canonical cWW pair | B+A | RNA 17-mer | U | 8 | U | 9 | G | 10 | * | U | 8 | U | 9 | G | 10 | cWW | cWW | ||
| 12 | IL_4WF9_018 | 4WF9 | 0.2326 | 0 | Isolated non-canonical cWW pair | X | LSU rRNA | U | 705 | U | 706 | G | 707 | * | U | 638 | U | 639 | G | 640 | cWW | cWW | ||
| 13 | IL_4Y1M_005 | 4Y1M | 0.1418 | 0 | Isolated non-canonical cWW pair | B | E. coli yybP-ykoY riboswitch | A | 103 | U | 104 | A | 105 | * | U | 4 | U | 5 | U | 6 | cWW | ncWw | cWW | |
| 14 | IL_9NLN_002 | 9NLN | 0.1623 | 0 | C | RNA (CVB3 IRES Domain V) | U | 102 | U | 103 | G | 104 | * | C | 9 | U | 10 | G | 11 | cWW | ncWw | cWW | ||
| 15 | IL_9SUM_188 | 9SUM | 0.1374 | 0 | CA | SSU rRNA | U | 1024 | U | 1025 | C | 1026 | * | G | 1032 | U | 1033 | G | 1034 | cWW | cWW | |||
| 16 | IL_9PN5_015 | 9PN5 | 0.0000 | 0 | A1 | LSU rRNA | U | 429 | U | 430 | U | 431 | * | A | 628 | U | 629 | A | 630 | cWW | cWW | |||
| 17 | IL_9TEL_001 | 9TEL | 0.1705 | 0 | X+Y | RNA (10-mer) | U | 4||A | U | 5||A | C | 6 | * | G | 5||A | U | 6 | A | 7 | cWW | cWW | |||
| 18 | IL_5D0B_001 | 5D0B | 0.1968 | 0 | Isolated non-canonical cWW pair | F | RNA (17-mer) | A | 37 | A | 38 | U | 39 | * | A | 31 | C | 32 | U | 33 | cWW | cWW | cWW | |
| 19 | IL_9TM6_001 | 9TM6 | 0.1680 | 0 | Isolated non-canonical cWW pair | R | 31-mer RNA hairpin with 5'pppG-C blunt end mimicking the influenza A virus vRNA promoter (panhandle) | A | 7 | A | 8 | C | 9 | * | G | 23 | C | 24 | U | 25 | cWW | cWW | cWW | |
| 20 | IL_4LFB_047 | 4LFB | 0.2273 | 0 | Isolated non-canonical cWW pair | A | SSU rRNA | G | 1193 | U | 1194 | C | 1195 | * | G | 1061 | U | 1062 | C | 1063 | cWW | cWw | cWW | |
| 21 | IL_8B0X_049 | 8B0X | 0.2572 | 0 | Isolated non-canonical cWW pair | A | SSU rRNA | G | 1193 | U | 1194 | C | 1195 | * | G | 1061 | U | 1062 | C | 1063 | cWW | cWw | cWW | |
| 22 | IL_5VCI_001 | 5VCI | 0.2516 | 0 | Isolated non-canonical cWW pair | A+B | RNA (22-mer) + RNA (12-mer) | C | 1 | U | 2 | G | 3 | * | C | 10 | U | 11 | G | 12 | cWW | cWw | cWW | |
| 23 | IL_4PCJ_001 | 4PCJ | 0.2191 | 0 | Isolated non-canonical cWW pair | A | trCUG-3('5) | C | 1 | U | 2 | G | 3 | * | C | 33 | U | 34 | G | 35 | cWW | cWw | cWW | |
| 24 | IL_5MWI_001 | 5MWI | 0.1894 | 0 | Isolated non-canonical cWW pair | A | RNA G(CUG)8C duplex | C | 2 | U | 3 | G | 4 | * | C | 23||||4_555 | U | 24||||4_555 | G | 25||||4_555 | cWW | cWw | cWW | |
| 25 | IL_6E7L_001 | 6E7L | 0.1687 | 0 | Isolated non-canonical cWW pair | A | RNA (22-mer) | C | 17||||7_375 | U | 18||||7_375 | G | 19||||7_375 | * | C | 4 | U | 5 | G | 6 | ncWW | cWW | cWw | cWW |
| 26 | IL_3LOA_002 | 3LOA | 0.1902 | 0 | Isolated non-canonical cWW pair | A+B | RNA (21-mer) + RNA (23-mer) | G | 1405 | 5BU | 1406 | C | 1407 | * | G | 1494 | U | 1495 | C | 1496 | cWW | cWw | cWW | |
| 27 | IL_4KZD_003 | 4KZD | 0.2179 | 0 | Isolated non-canonical cWW pair | R | RNA (84-MER) | C | 66 | U | 67 | C | 68 | * | G | 17 | U | 18 | G | 19 | cWW | cWw | cWW | |
| 28 | IL_3RG5_002 | 3RG5 | 0.2698 | 0 | Isolated non-canonical cWW pair | B | Selenocysteine transfer RNA | C | 66 | U | 67 | U | 67|||A | * | A | 5|||B | U | 6 | G | 7 | cWW | cWw | cWW | |
| 29 | IL_1MZP_001 | 1MZP | 0.2498 | 0 | Isolated non-canonical cWW pair | B | fragment of 23S rRNA | C | 50 | U | 51 | U | 52 | * | A | 4 | U | 5 | G | 6 | cWW | cWw | cWW | |
| 30 | IL_8G9Z_001 | 8G9Z | 0.2962 | 0 | Isolated non-canonical cWW pair | E | Selenocysteine transfer RNA | C | 66||A | U | 67||A | U | 67||A|A | * | A | 5||A|B | U | 6||A | G | 7||A | cWW | cWw | cWW | |
| 31 | IL_7QQX_004 | 7QQX | 0.2594 | 0 | Isolated non-canonical cWW pair | A+C | tracrRNA + FANCF off-target5 target strand | C | 8 | U | 9 | U | 10 | * | DA | 11 | DT | 12 | DG | 13 | cWW | cWW | ||
| 32 | IL_4PCJ_002 | 4PCJ | 0.3282 | 0 | Isolated non-canonical cWW pair | A | trCUG-3('5) | C | 30 | U | 31 | G | 32 | * | C | 4 | PSU | 5 | G | 6 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUG*CUG | 4 |
| CUG*CUG | 4 |
| CUU*AUG | 3 |
| UUA*UUG | 2 |
| UUG*UUG | 2 |
| GUC*GUC | 2 |
| UUG*CCG | 1 |
| UAG*CCG | 1 |
| UAC*GCG | 1 |
| UUA*UG | 1 |
| UCG*CCG | 1 |
| AUA*UUU | 1 |
| UUC*GUG | 1 |
| UUU*AUA | 1 |
| UUC*GUA | 1 |
| AAU*ACU | 1 |
| AAC*GCU | 1 |
| GC*GUC | 1 |
| CUC*GUG | 1 |
| CUU*ATG | 1 |
| CUG*C(PSU)G | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*U | 22 |
| A*C | 4 |
| U*C | 1 |
| U*(OMU) | 1 |
| C*C | 1 |
| (5BU)*U | 1 |
| U*T | 1 |
| U*(PSU) | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (21)
- (8)
- Isolated non-canonical cWW pair (H) (3)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.25 | Max 0.53
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