IL_11HG_078

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_078 not in the Motif Atlas

Homologous match to IL_9H3G_238

Geometric discrepancy: 0.1058

The information below is about IL_9H3G_238

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

11HG|1|18|C|1717
11HG|1|18|G|1718
11HG|1|18|A|1719
11HG|1|18|U|1720
*
11HG|1|18|A|1813
11HG|1|18|G|1814
11HG|1|18|A|1815
11HG|1|18|G|1816

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 23

Ribosomal protein L23

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain 41

eL41

Chain RR

uS12