IL_58355.4

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8	1-8	2-6	2-7	3-6	4-5
1	IL_8GLP_190	8GLP	0.3808	1		S2	SSU rRNA	C	37	A	38	A	39	A	40	*	U	514	G	515	OMC	517	G	518	cWW		tSH	tHS	cWW
2	IL_9H3G_127	9H3G	0.2668	1		A	LSU rRNA	A	3137	G	3138	A	3139	G	3141	*	C	3002	G	3003	A	3004	U	3005	cWW		tSH	tHS	cWW
3	IL_9AXU_107	9AXU	0.3283	2	Double sheared (H)	2	LSU rRNA	C	3100	A	3101	A	3102	U	3103	*	A	3235	G	3236	A	3237	G	3240	cWW		tSH	tHS	cWW
4	IL_9PN5_110	9PN5	0.3545	2		A1	LSU rRNA	C	3004	A	3005	A	3006	U	3007	*	A	3139	G	3140	A	3141	G	3144	cWW		tSH	tHS	cWW
5	IL_8OI5_114	8OI5	0.3430	2	Double sheared (H)	1	LSU rRNA	A	3111	G	3112	A	3113	G	3116	*	C	2976	A	2977	A	2978	U	2979	cWW		tSH	tHS	cWW
6	IL_4LFB_067	4LFB	0.3294	0	Double sheared	A	SSU rRNA	G	1273	G	1274	A	1275	G	1276	*	C	1259	C	1260	A	1261	C	1262	cWW	ncWW	tSH	ntHS	cWW
7	IL_8CRE_474	8CRE	0.2455	0	Double sheared	CM	SSU rRNA	C	1716	A	1717	A	1718	A	1719	*	U	1656	G	1657	A	1658	G	1659	cWW		tSH	tHS	cWW
8	IL_8GLP_282	8GLP	0.2266	0	Double sheared (H)	S2	SSU rRNA	C	1798	G	1799	A	1800	A	1801	*	U	1733	G	1734	A	1735	G	1736	cWW		tSH	tHS	cWW
9	IL_9H3G_241	9H3G	0.2135	0		h1	SSU rRNA	U	1733	A	1734	A	1735	A	1736	*	U	1671	G	1672	A	1673	A	1674	cWW		tSH	tHS	cWW
10	IL_4ZNP_002	4ZNP	0.2210	0	Double sheared	A	ZMP/ZTP riboswitch	G	37	G	38	A	39	C	40	*	G	9	G	10	A	11	C	12	cWW		tSH	tHS	cWW
11	IL_3D0U_002	3D0U	0.1327	0	Double sheared	A	Lysine riboswitch	C	16	G	17	A	18	G	19	*	C	67	G	68	A	69	G	70	cWW		tSH	tHS	cWW
12	IL_1SAQ_005	1SAQ	0.1376	0	Double sheared	D+C	RNA (8-mer)	C	211	G	212	A	213	G	214	*	C	203	G	204	A	205	G	206	cWW		tSH	ntHS	cWW
13	IL_1SA9_002	1SA9	0.1198	0	Double sheared	C+D	RNA (8-mer)	C	203	G	204	A	205	G	206	*	C	211	G	212	A	213	G	214	cWW		tSH	ntHS	cWW
14	IL_8GLP_052	8GLP	0.0000	0		L5	LSU rRNA	C	1431	G	1432	A	1433	G	1434	*	C	1450	G	1451	A	1452	G	1453	cWW		tSH	tHS	cWW
15	IL_8CRE_402	8CRE	0.1281	0	Double sheared	CM	SSU rRNA	C	184	G	185	A	186	C	187	*	G	194	A	195	A	196	G	197	cWW		tSH	tHS	cWW
16	IL_7A0S_081	7A0S	0.1807	0	Double sheared	X	LSU rRNA	C	2329	G	2330	A	2331	G	2332	*	C	2343	G	2344	A	2345	G	2346	cWW		tSH	ntHS	cWW
17	IL_4WF9_087	4WF9	0.1460	0	Double sheared	X	LSU rRNA	C	2377	G	2378	A	2379	G	2380	*	C	2391	G	2392	A	2393	G	2394	cWW		tSH	tHS	cWW
18	IL_9DFE_089	9DFE	0.1478	0	Double sheared	1A	LSU rRNA	C	2350	G	2351	A	2352	G	2353	*	C	2364	G	2365	A	2366	G	2367	cWW		tSH	tHS	cWW
19	IL_8B0X_148	8B0X	0.1548	0	Double sheared (H)	a	LSU rRNA	C	2368	G	2369	A	2370	G	2371	*	C	2354	G	2355	A	2356	G	2357	cWW		tSH	tHS	cWW
20	IL_4XWF_001	4XWF	0.1760	0	Double sheared	A	ZMP/ZTP riboswitch	G	36	G	37	A	38	G	39	*	U	7	G	8	A	9	C	10	cWW		tSH	tHS	cWW
21	IL_5BTP_004	5BTP	0.1611	0	Double sheared	B	ZMP/ZTP riboswitch	G	41	A	42	A	43	G	44	*	U	12	G	13	A	14	C	15	cWW		tSH	tHS	cWW
22	IL_9BZC_001	9BZC	0.1664	0	Double sheared	A	RNA (87-MER)	G	36	A	37	A	38	G	39	*	U	9	G	10	A	11	C	12	cWW		tSH	tHS	cWW
23	IL_4LFB_060	4LFB	0.1475	0	Double sheared	A	SSU rRNA	U	1481	G	1482	A	1483	C	1484	*	G	1416	G	1417	A	1418	G	1419	cWW		tSH	tHS	cWW
24	IL_4KZD_002	4KZD	0.1445	0	Double sheared	R	RNA (84-MER)	G	11	A	12	A	13	A	14	*	U	71	A	72	A	73	C	74	cWW		tSH	tHS	cWW
25	IL_5AOX_003	5AOX	0.1600	0	Double sheared	C	ALU JO CONSENSUS RNA	G	58	G	59	A	60	U	61	*	A	105	G	106	A	107	C	108	cWW		tSH	tHS	cWW
26	IL_4WF9_016	4WF9	0.2337	0	Double sheared	X	LSU rRNA	A	581	G	582	A	583	G	584	*	U	597	G	598	A	599	U	600	cWW		tSH	tHS	cWW
27	IL_8B0X_076	8B0X	0.2247	0	Double sheared (H)	a	LSU rRNA	U	556	G	557	A	558	C	559	*	G	536	G	537	A	538	G	539	cWW		tSH	tHS	cWW
28	IL_4UYK_005	4UYK	0.2715	0	Double sheared	R	SRP RNA	C	121	C	122	A	123	C	124	*	G	77	G	78	C	79	G	80	cWW		ncWw	tHS	cWW
29	IL_6YL5_010	6YL5	0.2166	0	Double sheared	I	Chains: A,B,C,D,E,F,G,H,I,J,K,L	G	24	G	25	C	26	G	27	*	C	12	A	13	A	14	C	15	cWW		tSH	tHS	cWW
30	IL_6YML_002	6YML	0.2268	0	Double sheared	A	Chains: A,C	G	24	G	25	C	26	G	27	*	C	12	A	13	A	14	C	15	cWW		ntSH	tHS	cWW
31	IL_8T29_001	8T29	0.2575	0	Double sheared; A in syn	R	RNA (90-MER)	G	80	A	81	A	82	G	83	*	C	8	G	9	A	10	C	11	cWW		tSH	ntWS	cWW
32	IL_9H3G_238	9H3G	0.2603	0		h1	SSU rRNA	A	1748	G	1749	A	1750	G	1751	*	C	1655	G	1656	A	1657	U	1658	cWW		tSH	tHS	cWW
33	IL_9PN5_225	9PN5	0.3101	0		B5	SSU rRNA	A	1744	G	1745	A	1746	G	1747	*	C	1653	G	1654	A	1655	U	1656	cWW		tSH	tHS	cWW
34	IL_8GLP_279	8GLP	0.2994	0	Double sheared (H)	S2	SSU rRNA	C	1717	G	1718	A	1719	U	1720	*	A	1813	G	1814	A	1815	G	1816	cWW		tSH	tHS	cWW
35	IL_8CRE_471	8CRE	0.2709	0	Double sheared	CM	SSU rRNA	A	1731	G	1732	A	1733	G	1734	*	C	1640	G	1641	A	1642	U	1643	cWW		tSH	tHS	cWW
36	IL_8B0X_061	8B0X	0.4659	0	Double sheared (H)	A	SSU rRNA	G	1416	G	1417	A	1418	G	1419	*	U	1481	G	1482	A	1483	C	1484	cWW		tSH	tHS	cWW
37	IL_8OI5_132	8OI5	0.4505	0	Double sheared; A in syn (H)	1	LSU rRNA	C	3325	G	3326	A	3327	U	3328	*	A	3307	G	3308	A	3309	G	3310	cWW				cWW
38	IL_9AXU_123	9AXU	0.4358	0	Double sheared; A in syn (H)	2	LSU rRNA	C	3461	G	3462	A	3463	U	3464	*	A	3443	G	3444	A	3445	G	3446	cWW		tSH		cWW
39	IL_9PN5_131	9PN5	0.4387	0		A1	LSU rRNA	C	3360	G	3361	A	3362	U	3363	*	A	3342	G	3343	A	3344	G	3345	cWW		tSH		cWW
40	IL_4V9F_100	4V9F	0.4005	0	Double sheared	0	LSU rRNA	C	2881	G	2882	A	2883	G	2884	*	C	2873	G	2874	A	2875	G	2876	cWW		tSH	tHS	cWW
41	IL_8GLP_179	8GLP	0.3696	0		L5	LSU rRNA	C	5032	G	5033	A	5034	U	5035	*	A	5014	G	5015	A	5016	G	5017	cWW		tSH	tHS	cWW
42	IL_9H3G_146	9H3G	0.3932	0		A	LSU rRNA	C	3347	G	3348	A	3349	U	3350	*	A	3329	G	3330	A	3331	G	3332	cWW		tSH	tHS	cWW
43	IL_9E6Q_104	9E6Q	0.3958	0	Double sheared (H)	1	LSU rRNA	C	2986	G	2987	A	2988	G	2989	*	C	2975	G	2976	A	2977	G	2978	cWW		tSH	tHS	cWW
44	IL_9E6Q_100	9E6Q	0.4410	0		1	LSU rRNA	C	2927	G	2928	A	2929	G	2930	*	C	3016	G	3017	A	3018	G	3019	cWW		tSH	tHS	cWW
45	IL_3DIL_002	3DIL	0.5157	0	Double sheared	A	Lysine riboswitch	C	19	G	20	A	21	G	22	*	C	70	G	71	A	72	G	73	cWW		tSH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAG*CGAG	12
CGAU*AGAG	6
AGAG*CGAU	3
CAAA*UGAG	2
GGAG*UGAC	2
GAAG*UGAC	2
UGAC*GGAG	2
GGCG*CAAC	2
AGAAG*CGAU	1
CAAU*AGAAAG	1
CAAU*AGAACG	1
AGAACG*CAAU	1
GGAG*CCAC	1
CGAA*UGAG	1
UAAA*UGAA	1
GGAC*GGAC	1
CGAC*GAAG	1
GAAA*UAAC	1
GGAU*AGAC	1
AGAG*UGAU	1
CCAC*GGCG	1
GAAG*CGAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*GA	29
AA*GA	5
GC*AA	2
AA*GA(OMC)	1
GAA*GA	1
AA*GAAA	1
AA*GAAC	1
GAAC*AA	1
GA*CA	1
GA*AA	1
AA*AA	1
CA*GC	1

Release history

Release	4.10
Date	2026-05-20
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_58355.4 Version IL_58355.4 of this group appears in releases 4.10 to 4.10 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_58355.4 Version IL_58355.4 of this group appears in releases 4.10 to 4.10

Download

Csv

Json