IL_11HG_081
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HG_081 not in the Motif Atlas
- Homologous match to IL_9H3G_241
- Geometric discrepancy: 0.1153
- The information below is about IL_9H3G_241
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
11HG|1|18|U|1733
11HG|1|18|G|1734
11HG|1|18|A|1735
11HG|1|18|G|1736
*
11HG|1|18|C|1798
11HG|1|18|G|1799
11HG|1|18|A|1800
11HG|1|18|A|1801
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain S6
- 40S ribosomal protein S6
- Chain S8
- 40S ribosomal protein S8
- Chain W
- Ribosomal protein L24
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