IL_11HG_122

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

11HG|1|28|G|748, 11HG|1|28|U|914, 11HG|1|28|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_122 not in the Motif Atlas

Geometric match to IL_8GLP_040

Geometric discrepancy: 0.2187

The information below is about IL_8GLP_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25001.2

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

3

Unit IDs

11HG|1|28|G|745
11HG|1|28|A|746
11HG|1|28|A|747
11HG|1|28|G|748
11HG|1|28|G|749
11HG|1|28|U|750
11HG|1|28|G|751
11HG|1|28|G|752
*
11HG|1|28|U|911
11HG|1|28|G|912
11HG|1|28|U|913
11HG|1|28|U|914
11HG|1|28|A|915
11HG|1|28|C|916
11HG|1|28|A|917
11HG|1|28|G|918
11HG|1|28|C|919

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 14

60S ribosomal protein L14

Chain 20

Large ribosomal subunit protein eL20