IL_8GLP_040

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8GLP|1|L5|G|748, 8GLP|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_040 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.163

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8GLP|1|L5|G|745
8GLP|1|L5|A|746
8GLP|1|L5|A|747
8GLP|1|L5|G|748
8GLP|1|L5|G|749
8GLP|1|L5|U|750
8GLP|1|L5|G|751
8GLP|1|L5|G|752
*
8GLP|1|L5|U|911
8GLP|1|L5|G|912
8GLP|1|L5|U|913
8GLP|1|L5|U|914
8GLP|1|L5|A|915
8GLP|1|L5|C|916
8GLP|1|L5|A|917
8GLP|1|L5|G|918
8GLP|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a