IL_11HG_190

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_190 not in the Motif Atlas

Homologous match to IL_9PN5_078

Geometric discrepancy: 0.0802

The information below is about IL_9PN5_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

11HG|1|28|G|2889
11HG|1|28|C|2890
11HG|1|28|U|2891
*
11HG|1|28|A|3610
11HG|1|28|A|3611
11HG|1|28|C|3612

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 19

60S ribosomal protein L19

Chain S8

40S ribosomal protein S8