IL_11HV_004
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GAG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HV_004 not in the Motif Atlas
- Homologous match to IL_8GLP_004
- Geometric discrepancy: 0.0847
- The information below is about IL_8GLP_004
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_15011.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 54
Unit IDs
11HV|1|28|C|26
11HV|1|28|C|27
*
11HV|1|28|G|55
11HV|1|28|A|56
11HV|1|28|G|57
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein eL13
- Chain 15
- 60S ribosomal protein L15
- Chain 35
- 60S ribosomal protein L35
- Chain 37
- 60S ribosomal protein L37
- Chain 58
- 5.8S ribosomal RNA; 5.8S rRNA
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