IL_11HV_005
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HV_005 not in the Motif Atlas
- Homologous match to IL_8GLP_005
- Geometric discrepancy: 0.0637
- The information below is about IL_8GLP_005
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.3
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
11HV|1|28|C|30
11HV|1|28|U|31
11HV|1|28|G|32
11HV|1|28|A|33
11HV|1|28|A|34
11HV|1|28|U|35
11HV|1|28|U|36
11HV|1|28|U|37
*
11HV|1|28|A|44
11HV|1|28|U|45
11HV|1|28|U|46
11HV|1|28|A|47
11HV|1|28|G|48
11HV|1|28|U|49
11HV|1|28|C|50
11HV|1|28|A|51
11HV|1|28|G|52
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein eL13
- Chain 15
- 60S ribosomal protein L15
- Chain 37
- 60S ribosomal protein L37
- Chain 42
- eL42
- Chain dd
- 60S ribosomal protein L27a
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