IL_11HV_016
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 11HV|1|28|G|409, 11HV|1|28|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HV_016 not in the Motif Atlas
- Geometric match to IL_8GLP_019
- Geometric discrepancy: 0.0729
- The information below is about IL_8GLP_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.3
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
11HV|1|28|G|387
11HV|1|28|A|388
11HV|1|28|A|389
11HV|1|28|C|390
*
11HV|1|28|G|401
11HV|1|28|A|402
11HV|1|28|G|403
11HV|1|28|U|404
11HV|1|28|U|405
11HV|1|28|C|406
11HV|1|28|A|407
11HV|1|28|A|408
11HV|1|28|G|409
11HV|1|28|A|410
11HV|1|28|G|411
11HV|1|28|G|412
11HV|1|28|G|413
11HV|1|28|C|414
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 17
- 60S ribosomal protein L17
- Chain 26
- 60S ribosomal protein L26
- Chain 39
- 60S ribosomal protein L39
- Chain 58
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain EB
- Proliferation-associated protein 2G4
Coloring options: