IL_11HV_017
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HV_017 not in the Motif Atlas
- Homologous match to IL_8GLP_021
- Geometric discrepancy: 0.0583
- The information below is about IL_8GLP_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.3
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
11HV|1|28|G|415
11HV|1|28|U|416
11HV|1|28|G|417
11HV|1|28|A|418
11HV|1|28|A|419
11HV|1|28|A|420
11HV|1|28|C|421
*
11HV|1|58|G|13
11HV|1|58|U|14
11HV|1|58|G|15
11HV|1|58|G|16
11HV|1|58|A|17
11HV|1|58|U|18
11HV|1|58|C|19
Current chains
- Chain 28
- 28S rRNA
- Chain 58
- 5.8S rRNA
Nearby chains
- Chain 17
- 60S ribosomal protein L17
- Chain 32
- Large ribosomal subunit protein eL32
- Chain L4
- 60S ribosomal protein L4
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