IL_11HV_021

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAG*CACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_021 not in the Motif Atlas

Geometric match to IL_9H3G_114

Geometric discrepancy: 0.217

The information below is about IL_9H3G_114

Detailed Annotation

Tandem non-canonical cWW pairs with external base triple

Broad Annotation

Tandem non-canonical cWW pairs with external base triple

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

11HV|1|28|G|461
11HV|1|28|G|462
11HV|1|28|A|463
11HV|1|28|G|464
*
11HV|1|28|C|691
11HV|1|28|A|692
11HV|1|28|C|693
11HV|1|28|C|694

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L6

Large ribosomal subunit protein eL6

Chain gg

60S ribosomal protein L28