IL_11HV_032

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

11HV|1|28|G|729, 11HV|1|28|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_032 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.0506

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

11HV|1|28|C|727
11HV|1|28|U|728
11HV|1|28|G|729
11HV|1|28|G|730
11HV|1|28|G|731
*
11HV|1|28|C|938
11HV|1|28|G|939

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 14

60S ribosomal protein L14

Chain 20

Large ribosomal subunit protein eL20

Chain L7

60S ribosomal protein L7