IL_11HV_038

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_038 not in the Motif Atlas

Geometric match to IL_8GLP_054

Geometric discrepancy: 0.2197

The information below is about IL_8GLP_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

11HV|1|28|C|1097
11HV|1|28|G|1098
*
11HV|1|28|C|1197
11HV|1|28|G|1198
11HV|1|28|G|1199

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 20

Large ribosomal subunit protein eL20

Chain 21

60S ribosomal protein L21