IL_11HV_066

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_066 not in the Motif Atlas

Homologous match to IL_9H3G_053

Geometric discrepancy: 0.0915

The information below is about IL_9H3G_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HV|1|28|U|1861
11HV|1|28|U|1862
11HV|1|28|U|1863
*
11HV|1|28|A|1871
11HV|1|28|G|1872
11HV|1|28|A|1873

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 29

Large ribosomal subunit protein eL29

Chain 5

5S ribosomal RNA; 5S rRNA