IL_11HV_068

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCCCGAU*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_068 not in the Motif Atlas

Homologous match to IL_8GLP_076

Geometric discrepancy: 0.0744

The information below is about IL_8GLP_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

11HV|1|28|C|1911
11HV|1|28|G|1912
11HV|1|28|C|1913
11HV|1|28|C|1914
11HV|1|28|C|1915
11HV|1|28|G|1916
11HV|1|28|A|1917
11HV|1|28|U|1918
*
11HV|1|28|G|2064
11HV|1|28|G|2065

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 20

Large ribosomal subunit protein eL20

Chain L7

60S ribosomal protein L7

Chain bb

Large ribosomal subunit protein uL13

Chain ee

Large ribosomal subunit protein eL33