IL_11HV_072
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 11HV|1|28|C|1935, 11HV|1|28|A|2041, 11HV|1|28|U|2044, 11HV|1|28|G|2045
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HV_072 not in the Motif Atlas
- Homologous match to IL_8GLP_080
- Geometric discrepancy: 0.0745
- The information below is about IL_8GLP_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
11HV|1|28|G|1933
11HV|1|28|A|1934
11HV|1|28|C|1935
11HV|1|28|C|1936
11HV|1|28|C|1937
11HV|1|28|C|1938
11HV|1|28|A|1939
11HV|1|28|G|1940
11HV|1|28|A|1941
11HV|1|28|A|1942
11HV|1|28|A|1943
11HV|1|28|A|1944
*
11HV|1|28|U|2038
11HV|1|28|G|2039
11HV|1|28|A|2040
11HV|1|28|A|2041
11HV|1|28|A|2042
11HV|1|28|A|2043
11HV|1|28|U|2044
11HV|1|28|G|2045
11HV|1|28|G|2046
11HV|1|28|A|2047
11HV|1|28|U|2048
11HV|1|28|G|2049
11HV|1|28|G|2050
11HV|1|28|C|2051
11HV|1|28|G|2052
11HV|1|28|C|2053
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 10
- Ribosomal protein L10
- Chain 40
- Large ribosomal subunit protein eL40
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain L3
- 60S ribosomal protein L3
- Chain bb
- Large ribosomal subunit protein uL13
- Chain ee
- Large ribosomal subunit protein eL33
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