IL_11HV_076

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

11HV|1|28|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_076 not in the Motif Atlas

Geometric match to IL_1MMS_004

Geometric discrepancy: 0.1617

The information below is about IL_1MMS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

11HV|1|28|G|2001
11HV|1|28|A|2002
11HV|1|28|G|2003
11HV|1|28|U|2004
11HV|1|28|G|2005
*
11HV|1|28|C|2014
11HV|1|28|U|2015
11HV|1|28|C|2016

Current chains

Chain 28

28S rRNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

uL11