IL_11HV_080
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 11HV|1|28|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HV_080 not in the Motif Atlas
- Homologous match to IL_8GLP_086
- Geometric discrepancy: 0.058
- The information below is about IL_8GLP_086
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.3
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
11HV|1|28|C|2302
11HV|1|28|C|2303
11HV|1|28|U|2304
11HV|1|28|U|2305
11HV|1|28|G|2306
11HV|1|28|A|2307
11HV|1|28|A|2308
11HV|1|28|G|2309
*
11HV|1|28|U|2329
11HV|1|28|G|2330
11HV|1|28|G|2331
11HV|1|28|A|2332
11HV|1|28|G|2333
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 26
- 60S ribosomal protein L26
- Chain 32
- Large ribosomal subunit protein eL32
- Chain 58
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L4
- 60S ribosomal protein L4
Coloring options: