IL_11HV_086

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

11HV|1|28|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_086 not in the Motif Atlas

Homologous match to IL_9AXU_061

Geometric discrepancy: 0.486

The information below is about IL_9AXU_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.4

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

12

Unit IDs

11HV|1|28|G|2542
11HV|1|28|A|2543
11HV|1|28|G|2544
11HV|1|28|U|2545
11HV|1|28|G|2546
11HV|1|28|G|2547
*
11HV|1|28|C|2772
11HV|1|28|G|2773
11HV|1|28|C|2774

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 38

Large ribosomal subunit protein eL38

Chain 58

5.8S ribosomal RNA; 5.8S rRNA