IL_11HV_110

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

11HV|1|28|A|3785, 11HV|1|28|C|3791, 11HV|1|28|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_110 not in the Motif Atlas

Homologous match to IL_8GLP_307

Geometric discrepancy: 0.1579

The information below is about IL_8GLP_307

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.3

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

9

Unit IDs

11HV|1|28|C|3781
11HV|1|28|C|3782
11HV|1|28|A|3783
11HV|1|28|A|3784
11HV|1|28|A|3785
11HV|1|28|U|3786
11HV|1|28|G|3787
11HV|1|28|C|3788
11HV|1|28|C|3789
11HV|1|28|U|3790
11HV|1|28|C|3791
11HV|1|28|G|3792
*
11HV|1|28|C|3808
11HV|1|28|G|3809
11HV|1|28|C|3810
11HV|1|28|G|3811

Current chains

Chain 28

28S rRNA

Nearby chains