IL_11HV_111

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_111 not in the Motif Atlas

Homologous match to IL_8GLP_127

Geometric discrepancy: 0.0629

The information below is about IL_8GLP_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.4

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

12

Unit IDs

11HV|1|28|G|3895
11HV|1|28|C|3896
11HV|1|28|G|3897
11HV|1|28|G|3898
*
11HV|1|28|U|4563
11HV|1|28|A|4564
11HV|1|28|C|4565

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain bb

Large ribosomal subunit protein uL13